ucsc-vlaa/clinseekagent

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15 environment variables found in .env.example

Set these on your host before deploying. Each platform has an “Environment Variables” section in the deploy flow.

CLINSEEK_DATA_ROOT Repository and artifact roots
CLINSEEK_MODEL_DIR
BENCH_ROOT
IMAGE_ARTIFACT_DIR
EHR_MCP_URL EHR and image MCP endpoints
IMAGE_MCP_URL
SERPER_API_KEY secret Browser search backend. Optional; omit to use local/no-search mode.
AWS_DEFAULT_REGION secret AWS Bedrock. Either use the default AWS credential chain or a bearer token.
BEDROCK_REGION
BEDROCK_API_KEY secret
AWS_BEARER_TOKEN_BEDROCK secret
VLLM_BASE_URL OpenAI-compatible vLLM backend
VLLM_API_KEY secret
VLLM_MODEL
HF_TOKEN secret Hugging Face gated models / datasets

Best match Fly.io Anything Dockerized — requires the Fly CLI.

macOS

brew install flyctl && fly launch --from https://github.com/ucsc-vlaa/clinseekagent

Linux

curl -L https://fly.io/install.sh | sh && fly launch --from https://github.com/ucsc-vlaa/clinseekagent

Windows (PowerShell)

iwr https://fly.io/install.ps1 -useb | iex; fly launch --from https://github.com/ucsc-vlaa/clinseekagent

Or deploy to a different host